dbBact

Experiment ID: 88

Field	Description
name	characterization of fecal microbiome of cape buffalo
qiita	1736
datamd5	1f3d5ca8c65cb88cc39b35392b1fd621
mapmd5	e3ba245a2bba861e4e2dd57085da12f3

Annotations for experiment:

term enrichment score

Term	Score
syncerus caffer caffer	0.500000
cape buffalo	0.500000
herd	0.444444
croc bridge herd	0.285714
LOWER IN lower sabie herd	0.285714
lower sabie herd	0.285714
LOWER IN croc bridge herd	0.285714
south africa	0.166667
young age	0.142857
LOWER IN old age	0.142857
age	0.076923
feces	0.004598

Fraction of dbbact annotations with this term covered by the query

Term	Score
herd	0.500000
croc bridge herd	0.500000
LOWER IN lower sabie herd	0.500000
lower sabie herd	0.500000
LOWER IN croc bridge herd	0.500000
syncerus caffer caffer	0.333333
cape buffalo	0.333333
young age	0.111111
LOWER IN old age	0.111111
south africa	0.090909
age	0.047619
feces	0.002304

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
south africa	1.000000
syncerus caffer caffer	1.000000
cape buffalo	1.000000
herd	0.400000
croc bridge herd	0.200000
LOWER IN lower sabie herd	0.200000
lower sabie herd	0.200000
LOWER IN croc bridge herd	0.200000
age	0.200000
young age	0.200000
LOWER IN old age	0.200000

Number of experiments associating the term to the sequence

Term	Score
feces	1.000000
south africa	1.000000
syncerus caffer caffer	1.000000
cape buffalo	1.000000
herd	1.000000
croc bridge herd	1.000000
LOWER IN lower sabie herd	1.000000
lower sabie herd	1.000000
LOWER IN croc bridge herd	1.000000
age	1.000000
young age	1.000000
LOWER IN old age	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
88	amnon	higher in younger cape buffalo feces ( high in age young age compared to old age in feces south africa syncerus caffer caffer cape buffalo )	2017-03-08	v4	1 / 5	approved	No
88	amnon	dominant feces, south africa, syncerus caffer caffer, cape buffalo	2017-03-08	v4	1 / 8	approved	No
88	amnon	different between herds in cape buffalo feces ( high in herd lower sabie herd compared to croc bridge herd in feces south africa syncerus caffer caffer cape buffalo )	2017-03-08	v4	1 / 194	approved	No
88	amnon	different between herds in cape buffalo feces ( high in herd croc bridge herd compared to lower sabie herd in feces south africa syncerus caffer caffer cape buffalo )	2017-03-08	v4	1 / 208	approved	No
88	amnon	common feces, south africa, syncerus caffer caffer, cape buffalo	2017-03-08	v4	1 / 891	approved	No

Problems / suggestions? Please visit the dbBact forum