dbBact

Experiment ID: 906

Field	Description
name	shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal
sra	prjna701759?
doi	https://doi.org/10.1186/s42523-021-00105-4
datamd5	2a115bbd68d00398e33ce7c50e7e7484
mapmd5	3947149434bd207a7be5b679d5c64310

Annotations for experiment:

term enrichment score

Term	Score
grey squirrel	0.666667
sciurus carolinensis	0.500000
province of ontario	0.285714
LOWER IN forested area	0.250000
forested area	0.181818
LOWER IN male organism	0.166667
LOWER IN female organism	0.133333
LOWER IN city	0.125000
male organism	0.086957
female organism	0.080000
city	0.066667
canada	0.055556
feces	0.004577

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN forested area	0.500000
grey squirrel	0.500000
sciurus carolinensis	0.333333
forested area	0.200000
province of ontario	0.166667
LOWER IN male organism	0.166667
LOWER IN female organism	0.111111
LOWER IN city	0.100000
male organism	0.058824
female organism	0.052632
city	0.041667
canada	0.028571
feces	0.002294

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
canada	1.000000
province of ontario	1.000000
sciurus carolinensis	1.000000
grey squirrel	1.000000
city	0.166667
LOWER IN forested area	0.166667
forested area	0.166667
LOWER IN city	0.166667
female organism	0.166667
LOWER IN male organism	0.166667
male organism	0.166667
LOWER IN female organism	0.166667

Number of experiments associating the term to the sequence

Term	Score
city	1.000000
LOWER IN forested area	1.000000
feces	1.000000
canada	1.000000
province of ontario	1.000000
sciurus carolinensis	1.000000
grey squirrel	1.000000
forested area	1.000000
LOWER IN city	1.000000
female organism	1.000000
LOWER IN male organism	1.000000
male organism	1.000000
LOWER IN female organism	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
906	amnon	high in male organism compared to female organism in feces canada province of ontario sciurus carolinensis grey squirrel	2022-05-19	v4	1 / 8	approved	No
906	amnon	dominant feces, canada, province of ontario, sciurus carolinensis, grey squirrel	2022-05-19	v4	1 / 9	approved	No
906	amnon	high in female organism compared to male organism in feces canada province of ontario sciurus carolinensis grey squirrel	2022-05-19	v4	1 / 12	approved	No
906	amnon	common feces, canada, province of ontario, sciurus carolinensis, grey squirrel	2022-05-19	v4	1 / 165	approved	No
906	amnon	high in forested area compared to city in feces canada province of ontario sciurus carolinensis grey squirrel	2022-05-19	v4	1 / 416	approved	No
906	amnon	high in city compared to forested area in feces canada province of ontario sciurus carolinensis grey squirrel	2022-05-19	v4	1 / 421	approved	No

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