Experiment ID: 909

Field Description
namecage and maternal effects on the bacterial communities of the murine gut
sraprjeb6905
doihttps://doi.org/10.1038/s41598-021-89185-5
datamd53bd1472c2056d634a1aec0934dda263e
mapmd5ae488ff22027fd6abe23bedde7ec38e4

Annotations for experiment:

term enrichment score
TermScore
manchester0.666667
age 18 weeks0.375000
colonic mucosa0.315789
age 6 weeks0.214286
LOWER IN age 18 weeks0.200000
LOWER IN age 6 weeks0.200000
united kingdom0.125000
lumen of colon0.125000
LOWER IN lumen of colon0.125000
LOWER IN feces0.045455
mouse0.029851
mus musculus0.027027
research facility0.010695
feces0.004728
Fraction of dbbact annotations with this term covered by the query
TermScore
manchester0.500000
lumen of colon0.500000
LOWER IN lumen of colon0.500000
age 18 weeks0.333333
LOWER IN age 18 weeks0.333333
LOWER IN age 6 weeks0.333333
colonic mucosa0.250000
age 6 weeks0.142857
united kingdom0.066667
LOWER IN feces0.033333
mouse0.015152
mus musculus0.013699
research facility0.005376
feces0.002375
Fraction of annotations for the query sequences containing the term
TermScore
research facility1.000000
mus musculus1.000000
mouse1.000000
united kingdom1.000000
manchester1.000000
feces0.500000
age 6 weeks0.428571
colonic mucosa0.428571
age 18 weeks0.428571
LOWER IN age 18 weeks0.142857
LOWER IN age 6 weeks0.142857
lumen of colon0.071429
LOWER IN feces0.071429
LOWER IN lumen of colon0.071429
Number of experiments associating the term to the sequence
TermScore
feces1.000000
research facility1.000000
mus musculus1.000000
mouse1.000000
age 6 weeks1.000000
united kingdom1.000000
manchester1.000000
colonic mucosa1.000000
age 18 weeks1.000000
lumen of colon1.000000
LOWER IN feces1.000000
LOWER IN age 18 weeks1.000000
LOWER IN lumen of colon1.000000
LOWER IN age 6 weeks1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
909amnon high in age 18 weeks compared to age 6 weeks in research facility colonic mucosa mus musculus mouse united kingdom manchester 2022-05-20v31 / 18approvedNo
909amnon high in age 18 weeks compared to age 6 weeks in feces research facility mus musculus mouse united kingdom manchester 2022-05-20v31 / 22approvedNo
909amnondominant feces, research facility, mus musculus, mouse, age 18 weeks, united kingdom, manchester2022-05-20v31 / 25approvedNo
909amnondominant research facility, colonic mucosa, mus musculus, mouse, age 18 weeks, united kingdom, manchester2022-05-20v31 / 25approvedNo
909amnondominant feces, research facility, mus musculus, mouse, age 6 weeks, united kingdom, manchester2022-05-20v31 / 26approvedNo
909amnondominant research facility, colonic mucosa, mus musculus, mouse, age 6 weeks, united kingdom, manchester2022-05-20v31 / 26approvedNo
909amnon high in feces compared to lumen of colon in research facility mus musculus mouse united kingdom manchester 2022-05-20v31 / 35approvedNo
909amnon high in age 6 weeks compared to age 18 weeks in research facility colonic mucosa mus musculus mouse united kingdom manchester 2022-05-20v31 / 39approvedNo
909amnon high in age 6 weeks compared to age 18 weeks in feces research facility mus musculus mouse united kingdom manchester 2022-05-20v31 / 41approvedNo
909amnon high in lumen of colon compared to feces in research facility mus musculus mouse united kingdom manchester 2022-05-20v31 / 53approvedNo
909amnoncommon feces, research facility, mus musculus, mouse, age 18 weeks, united kingdom, manchester2022-05-20v31 / 161approvedNo
909amnoncommon research facility, colonic mucosa, mus musculus, mouse, age 18 weeks, united kingdom, manchester2022-05-20v31 / 161approvedNo
909amnoncommon feces, research facility, mus musculus, mouse, age 6 weeks, united kingdom, manchester2022-05-20v31 / 168approvedNo
909amnoncommon research facility, colonic mucosa, mus musculus, mouse, age 6 weeks, united kingdom, manchester2022-05-20v31 / 168approvedNo

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