dbBact

Experiment ID: 956

Field	Description
name	cooked common bean flour, but not its protein hydrolysate, has the potential to improve gut microbiota composition and function in balb/c mice fed a high-fat diet added with 6-propyl-2-thiouracil
sra	prjna658699
doi	https://doi.org/10.1016/j.jnutbio.2022.109022
datamd5	3c81616708cf631ac710b50360c33538
mapmd5	e0cdcc580f6c2002ea0b546339002203

Annotations for experiment:

term enrichment score

Term	Score
6-propyl-2-thiouracil	0.500000
bean flour diet	0.250000
LOWER IN no bean flour diet	0.250000
LOWER IN 6-propyl-2-thiouracil	0.250000
no bean flour diet	0.250000
LOWER IN bean flour diet	0.250000
balb/c	0.200000
high fat diet	0.117647
mouse chow	0.117647
male organism	0.111111
LOWER IN high fat diet	0.100000
adult organism	0.095238
LOWER IN mouse chow	0.086957
brazil	0.076923
caecum	0.039216
mouse	0.029851
mus musculus	0.027027
research facility	0.010471

Fraction of dbbact annotations with this term covered by the query

Term	Score
bean flour diet	0.500000
LOWER IN no bean flour diet	0.500000
6-propyl-2-thiouracil	0.500000
LOWER IN 6-propyl-2-thiouracil	0.500000
no bean flour diet	0.500000
LOWER IN bean flour diet	0.500000
balb/c	0.111111
LOWER IN high fat diet	0.071429
high fat diet	0.066667
mouse chow	0.066667
male organism	0.058824
LOWER IN mouse chow	0.058824
adult organism	0.050000
brazil	0.040000
caecum	0.020000
mouse	0.015152
mus musculus	0.013699
research facility	0.005263

Fraction of annotations for the query sequences containing the term

Term	Score
research facility	1.000000
caecum	1.000000
mus musculus	1.000000
balb/c	1.000000
brazil	1.000000
mouse	1.000000
male organism	1.000000
adult organism	1.000000
high fat diet	0.500000
6-propyl-2-thiouracil	0.500000
mouse chow	0.500000
bean flour diet	0.166667
LOWER IN no bean flour diet	0.166667
LOWER IN high fat diet	0.166667
LOWER IN 6-propyl-2-thiouracil	0.166667
LOWER IN mouse chow	0.166667
no bean flour diet	0.166667
LOWER IN bean flour diet	0.166667

Number of experiments associating the term to the sequence

Term	Score
bean flour diet	1.000000
LOWER IN no bean flour diet	1.000000
research facility	1.000000
caecum	1.000000
mus musculus	1.000000
balb/c	1.000000
high fat diet	1.000000
brazil	1.000000
mouse	1.000000
male organism	1.000000
adult organism	1.000000
6-propyl-2-thiouracil	1.000000
mouse chow	1.000000
LOWER IN high fat diet	1.000000
LOWER IN 6-propyl-2-thiouracil	1.000000
LOWER IN mouse chow	1.000000
no bean flour diet	1.000000
LOWER IN bean flour diet	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
956	amnon	high in no bean flour diet compared to bean flour diet in research facility caecum mus musculus balb/c high fat diet brazil mouse male organism adult organism 6-propyl-2-thiouracil	2022-12-17	v4	1 / 23	approved	No
956	amnon	dominant research facility, caecum, mus musculus, balb/c, brazil, mouse, mouse chow, male organism, adult organism	2022-12-17	v4	1 / 26	approved	No
956	amnon	high in high fat diet 6-propyl-2-thiouracil compared to mouse chow in research facility caecum mus musculus balb/c brazil mouse male organism adult organism	2022-12-17	v4	1 / 36	approved	No
956	amnon	high in mouse chow compared to high fat diet 6-propyl-2-thiouracil in research facility caecum mus musculus balb/c brazil mouse male organism adult organism	2022-12-17	v4	1 / 48	approved	No
956	amnon	common research facility, caecum, mus musculus, balb/c, brazil, mouse, mouse chow, male organism, adult organism	2022-12-17	v4	1 / 103	approved	No
956	amnon	high in bean flour diet compared to no bean flour diet in research facility caecum mus musculus balb/c high fat diet brazil mouse male organism adult organism 6-propyl-2-thiouracil	2022-12-17	v4	1 / 166	approved	No

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