Experiment ID: 963

Field Description
namegrowth promotion and antibiotic induced metabolic shifts in the chicken gut microbiome
doihttps://doi.org/10.1038/s42003-022-03239-6
sraprjna751585
datamd58dd477c333da6b86182667425db51a28
mapmd550ea68857a2e84a6437f2934a4420567

Annotations for experiment:

term enrichment score
TermScore
state of indiana0.666667
age 5 weeks0.350000
LOWER IN age 3 weeks0.200000
age 1 week0.200000
broiler chicken0.200000
age 3 weeks0.181818
LOWER IN avilamycin0.142857
LOWER IN virginiamycin0.142857
avilamycin0.142857
virginiamycin0.142857
LOWER IN age 5 weeks0.125000
LOWER IN age 1 week0.117647
male organism0.111111
chicken0.095238
gallus gallus0.090909
caecum0.040000
research facility0.010753
LOWER IN control0.009259
control0.009050
united states of america0.006849
Fraction of dbbact annotations with this term covered by the query
TermScore
state of indiana0.500000
LOWER IN avilamycin0.500000
LOWER IN virginiamycin0.500000
avilamycin0.500000
virginiamycin0.500000
age 5 weeks0.250000
LOWER IN age 3 weeks0.250000
LOWER IN age 5 weeks0.250000
age 3 weeks0.200000
LOWER IN age 1 week0.200000
age 1 week0.166667
broiler chicken0.111111
male organism0.058824
chicken0.050000
gallus gallus0.047619
caecum0.020408
research facility0.005405
LOWER IN control0.004762
control0.004651
united states of america0.003436
Fraction of annotations for the query sequences containing the term
TermScore
united states of america1.000000
research facility1.000000
caecum1.000000
gallus gallus1.000000
chicken1.000000
broiler chicken1.000000
male organism1.000000
state of indiana1.000000
age 5 weeks0.583333
age 1 week0.250000
age 3 weeks0.166667
LOWER IN age 3 weeks0.166667
control0.166667
LOWER IN control0.166667
LOWER IN age 1 week0.083333
LOWER IN age 5 weeks0.083333
LOWER IN avilamycin0.083333
LOWER IN virginiamycin0.083333
avilamycin0.083333
virginiamycin0.083333
Number of experiments associating the term to the sequence
TermScore
age 3 weeks1.000000
LOWER IN age 1 week1.000000
united states of america1.000000
research facility1.000000
caecum1.000000
gallus gallus1.000000
chicken1.000000
broiler chicken1.000000
male organism1.000000
state of indiana1.000000
age 5 weeks1.000000
LOWER IN age 3 weeks1.000000
age 1 week1.000000
LOWER IN age 5 weeks1.000000
control1.000000
LOWER IN avilamycin1.000000
LOWER IN virginiamycin1.000000
avilamycin1.000000
LOWER IN control1.000000
virginiamycin1.000000
Exp. ID User ID Description Date Region Sequences Status Flag
963amnon high in virginiamycin compared to control in united states of america research facility caecum gallus gallus chicken broiler chicken male organism state of indiana age 5 weeks 2022-12-21v41 / 2approvedNo
963amnon high in avilamycin compared to control in united states of america research facility caecum gallus gallus chicken broiler chicken male organism state of indiana age 5 weeks 2022-12-21v41 / 5approvedNo
963amnon high in control compared to virginiamycin in united states of america research facility caecum gallus gallus chicken broiler chicken male organism state of indiana age 5 weeks 2022-12-21v41 / 7approvedNo
963amnondominant united states of america, research facility, caecum, gallus gallus, age 1 week, chicken, broiler chicken, male organism, state of indiana2022-12-20v41 / 19approvedNo
963amnondominant united states of america, research facility, caecum, gallus gallus, chicken, broiler chicken, male organism, state of indiana, age 5 weeks2022-12-21v41 / 19approvedNo
963amnon high in control compared to avilamycin in united states of america research facility caecum gallus gallus chicken broiler chicken male organism state of indiana age 5 weeks 2022-12-21v41 / 23approvedNo
963amnon high in age 1 week compared to age 3 weeks in united states of america research facility caecum gallus gallus chicken broiler chicken male organism state of indiana 2022-12-20v41 / 36approvedNo
963amnon high in age 3 weeks compared to age 5 weeks in united states of america research facility caecum gallus gallus chicken broiler chicken male organism state of indiana 2022-12-20v41 / 58approvedNo
963amnoncommon united states of america, research facility, caecum, gallus gallus, age 1 week, chicken, broiler chicken, male organism, state of indiana2022-12-20v41 / 74approvedNo
963amnon high in age 5 weeks compared to age 3 weeks in united states of america research facility caecum gallus gallus chicken broiler chicken male organism state of indiana 2022-12-20v41 / 109approvedNo
963amnoncommon united states of america, research facility, caecum, gallus gallus, chicken, broiler chicken, male organism, state of indiana, age 5 weeks2022-12-21v41 / 171approvedNo
963amnon high in age 3 weeks compared to age 1 week in united states of america research facility caecum gallus gallus chicken broiler chicken male organism state of indiana 2022-12-20v41 / 196approvedNo

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