dbBact

Experiment ID: 971

Field	Description
name	gut microbiota predicts body fat change following a low-energy diet: a preview intervention study
sra	prjeb43667
doi	https://doi.org/10.1186/s13073-022-01053-7
datamd5	d2ca9ef27c9e0b983d9e376107a61cd7
mapmd5	3052006c2990a30a5cd8dd1d15945301

Annotations for experiment:

term enrichment score

Term	Score
helsinki	0.400000
auckland city	0.400000
overweight body mass index status	0.333333
LOWER IN auckland city	0.250000
LOWER IN helsinki	0.250000
new zealand	0.222222
LOWER IN new zealand	0.222222
LOWER IN finland	0.181818
finland	0.153846
adult	0.008333
homo sapiens	0.005319
feces	0.004640

Fraction of dbbact annotations with this term covered by the query

Term	Score
LOWER IN auckland city	0.500000
LOWER IN helsinki	0.500000
helsinki	0.333333
LOWER IN new zealand	0.333333
auckland city	0.333333
overweight body mass index status	0.200000
LOWER IN finland	0.200000
new zealand	0.142857
finland	0.090909
adult	0.004184
homo sapiens	0.002667
feces	0.002326

Fraction of annotations for the query sequences containing the term

Term	Score
feces	1.000000
homo sapiens	1.000000
adult	1.000000
overweight body mass index status	1.000000
finland	0.500000
helsinki	0.500000
new zealand	0.500000
auckland city	0.500000
LOWER IN new zealand	0.166667
LOWER IN auckland city	0.166667
LOWER IN finland	0.166667
LOWER IN helsinki	0.166667

Number of experiments associating the term to the sequence

Term	Score
finland	1.000000
helsinki	1.000000
LOWER IN new zealand	1.000000
LOWER IN auckland city	1.000000
feces	1.000000
homo sapiens	1.000000
adult	1.000000
overweight body mass index status	1.000000
new zealand	1.000000
auckland city	1.000000
LOWER IN finland	1.000000
LOWER IN helsinki	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
971	amnon	dominant feces, homo sapiens, adult, new zealand, overweight body mass index status, auckland city	2022-12-23	v3	1 / 18	approved	No
971	amnon	dominant feces, homo sapiens, adult, finland, overweight body mass index status, helsinki	2022-12-23	v3	1 / 19	approved	No
971	amnon	common feces, homo sapiens, adult, new zealand, overweight body mass index status, auckland city	2022-12-23	v3	1 / 46	approved	No
971	amnon	common feces, homo sapiens, adult, finland, overweight body mass index status, helsinki	2022-12-23	v3	1 / 73	approved	No
971	amnon	high in new zealand auckland city compared to finland helsinki in feces homo sapiens adult overweight body mass index status	2022-12-23	v3	1 / 181	approved	No
971	amnon	high in finland helsinki compared to new zealand auckland city in feces homo sapiens adult overweight body mass index status	2022-12-23	v3	1 / 520	approved	No

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