dbBact

Experiment ID: 985

Field	Description
name	determinants and interactions of oral bacterial and fungal microbiota in healthy chinese adults
sra	prjna778006
doi	https://doi.org/10.1128/spectrum.02410-21
datamd5	a64e75881845f51dcc1a5a592192b604
mapmd5	ec40ccff9f7fc808ea9d587b68961b49

Annotations for experiment:

term enrichment score

Term	Score
oral rinse	0.666667
hong kong	0.400000
LOWER IN dentures	0.200000
dentures	0.200000
gingival bleeding	0.200000
LOWER IN gingival bleeding	0.200000
LOWER IN third decade human stage	0.181818
third decade human stage	0.133333
LOWER IN human late adulthood stage	0.117647
human late adulthood stage	0.076923
saliva	0.030303
LOWER IN control	0.009009
control	0.008811
adult	0.008163
homo sapiens	0.005236

Fraction of dbbact annotations with this term covered by the query

Term	Score
oral rinse	0.500000
LOWER IN dentures	0.500000
dentures	0.500000
gingival bleeding	0.500000
LOWER IN gingival bleeding	0.500000
LOWER IN third decade human stage	0.333333
hong kong	0.250000
third decade human stage	0.142857
LOWER IN human late adulthood stage	0.111111
human late adulthood stage	0.055556
saliva	0.015385
LOWER IN control	0.004587
control	0.004484
adult	0.004098
homo sapiens	0.002625

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
saliva	1.000000
adult	1.000000
hong kong	1.000000
oral rinse	1.000000
control	0.250000
LOWER IN control	0.250000
human late adulthood stage	0.125000
LOWER IN third decade human stage	0.125000
third decade human stage	0.125000
LOWER IN human late adulthood stage	0.125000
LOWER IN dentures	0.125000
dentures	0.125000
gingival bleeding	0.125000
LOWER IN gingival bleeding	0.125000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
saliva	1.000000
adult	1.000000
hong kong	1.000000
oral rinse	1.000000
human late adulthood stage	1.000000
LOWER IN third decade human stage	1.000000
third decade human stage	1.000000
LOWER IN human late adulthood stage	1.000000
control	1.000000
LOWER IN dentures	1.000000
dentures	1.000000
LOWER IN control	1.000000
gingival bleeding	1.000000
LOWER IN gingival bleeding	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
985	amnon	high in control compared to gingival bleeding in homo sapiens saliva adult hong kong oral rinse	2022-12-26	v1	1 / 2	approved	No
985	amnon	high in dentures compared to control in homo sapiens saliva adult hong kong oral rinse	2022-12-26	v1	1 / 6	approved	No
985	amnon	high in gingival bleeding compared to control in homo sapiens saliva adult hong kong oral rinse	2022-12-26	v1	1 / 6	approved	No
985	amnon	high in control compared to dentures in homo sapiens saliva adult hong kong oral rinse	2022-12-26	v1	1 / 7	approved	No
985	amnon	dominant homo sapiens, saliva, adult, hong kong, oral rinse	2022-12-26	v1	1 / 21	approved	No
985	amnon	high in third decade human stage compared to human late adulthood stage in homo sapiens saliva adult hong kong oral rinse	2022-12-26	v1	1 / 45	approved	No
985	amnon	high in human late adulthood stage compared to third decade human stage in homo sapiens saliva adult hong kong oral rinse	2022-12-26	v1	1 / 56	approved	No
985	amnon	common homo sapiens, saliva, adult, hong kong, oral rinse	2022-12-26	v1	1 / 84	approved	No

Problems / suggestions? Please visit the dbBact forum