dbBact

Experiment ID: 988

Field	Description
name	the impact of mouthwash on the oropharyngeal microbiota of men who have sex with men: a substudy of the omega trial
sra	prjna759097
doi	https://doi.org/10.1128/spectrum.01757-21
datamd5	4c18e07f670375ddccfee0dac74533b8
mapmd5	282142524acad81cb89c6f5269bb538e

Annotations for experiment:

term enrichment score

Term	Score
tonsil surface	0.470588
mouthwash	0.285714
LOWER IN mouthwash	0.285714
neisseria gonorrhoeae	0.285714
tonsil	0.242424
homosexual	0.216216
msm	0.216216
young adult stage	0.216216
pathogen	0.100000
australia	0.062016
male	0.039024
LOWER IN control	0.009091
control	0.008889
homo sapiens	0.005291

Fraction of dbbact annotations with this term covered by the query

Term	Score
mouthwash	0.500000
LOWER IN mouthwash	0.500000
neisseria gonorrhoeae	0.500000
tonsil surface	0.333333
tonsil	0.142857
homosexual	0.125000
msm	0.125000
young adult stage	0.125000
pathogen	0.066667
australia	0.032258
male	0.020000
LOWER IN control	0.004651
control	0.004545
homo sapiens	0.002653

Fraction of annotations for the query sequences containing the term

Term	Score
homo sapiens	1.000000
tonsil	0.800000
male	0.800000
australia	0.800000
homosexual	0.800000
msm	0.800000
young adult stage	0.800000
tonsil surface	0.800000
mouthwash	0.200000
LOWER IN control	0.200000
control	0.200000
LOWER IN mouthwash	0.200000
pathogen	0.200000
neisseria gonorrhoeae	0.200000

Number of experiments associating the term to the sequence

Term	Score
homo sapiens	1.000000
tonsil	1.000000
male	1.000000
australia	1.000000
homosexual	1.000000
msm	1.000000
young adult stage	1.000000
tonsil surface	1.000000
mouthwash	1.000000
LOWER IN control	1.000000
control	1.000000
LOWER IN mouthwash	1.000000
pathogen	1.000000
neisseria gonorrhoeae	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
988	amnon	neisseria gonorrhoeae pathogen (other homo sapiens, pathogen, neisseria gonorrhoeae)	2022-12-26	v4	1 / 1	approved	No
988	amnon	high in control compared to mouthwash in homo sapiens tonsil male australia homosexual msm young adult stage tonsil surface	2022-12-26	v4	1 / 3	approved	No
988	amnon	dominant homo sapiens, tonsil, male, australia, homosexual, msm, young adult stage, tonsil surface	2022-12-26	v4	1 / 21	approved	No
988	amnon	high in mouthwash compared to control in homo sapiens tonsil male australia homosexual msm young adult stage tonsil surface	2022-12-26	v4	1 / 30	approved	No
988	amnon	common homo sapiens, tonsil, male, australia, homosexual, msm, young adult stage, tonsil surface	2022-12-26	v4	1 / 89	approved	No

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