dbBact

Experiment ID: 478

Field	Description
name	comparative analysis of the bacterial community compositions of the shrimp intestine, surrounding water and sediment
sra	srr5387734
datamd5	0db3392cf54c96218f1808a1619d2cc9
mapmd5	929010cf0d4ce345a321c77faaaf7ae3

Annotations for experiment:

term enrichment score

Term	Score
shrimp farm	0.571429
litopenaeus vannamei	0.285714
pacific white shrimp	0.285714
saline water	0.125000
sediment	0.060606
intestine	0.058824
farm	0.045455
water	0.034483
china	0.009524

Fraction of dbbact annotations with this term covered by the query

Term	Score
shrimp farm	0.500000
litopenaeus vannamei	0.250000
pacific white shrimp	0.250000
saline water	0.076923
sediment	0.033333
intestine	0.032258
farm	0.023256
water	0.018182
china	0.004785

Fraction of annotations for the query sequences containing the term

Term	Score
farm	1.000000
china	1.000000
shrimp farm	0.666667
sediment	0.333333
water	0.333333
saline water	0.333333
intestine	0.333333
litopenaeus vannamei	0.333333
pacific white shrimp	0.333333

Number of experiments associating the term to the sequence

Term	Score
farm	1.000000
sediment	1.000000
shrimp farm	1.000000
china	1.000000
water	1.000000
saline water	1.000000
intestine	1.000000
litopenaeus vannamei	1.000000
pacific white shrimp	1.000000

Exp. ID	User ID	Description	Date	Region	Sequences	Status	Flag
478	amnon	dominant farm, intestine, litopenaeus vannamei, pacific white shrimp, china	2019-02-19	v4	1 / 3	approved	No
478	amnon	dominant farm, sediment, shrimp farm, china	2019-02-19	v4	1 / 7	approved	No
478	amnon	dominant farm, water, saline water, shrimp farm, china	2019-02-19	v4	1 / 11	approved	No
478	amnon	common farm, intestine, litopenaeus vannamei, pacific white shrimp, china	2019-02-19	v4	1 / 795	approved	No
478	amnon	common farm, water, saline water, shrimp farm, china	2019-02-19	v4	1 / 799	approved	No
478	amnon	common farm, sediment, shrimp farm, china	2019-02-19	v4	1 / 1085	approved	No

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